PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g26220

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TALE

Protein Properties

Length: 741aa MW: 81036.3 Da PI: 7.1907

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g26220	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.5	2.6e-09	530	567	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + CA02g26220 530 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 567 664459******************************88 PP
2	BELL	117	9.2e-38	391	462	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+e ++rY++y+eq+q+v++sF+ v+g g+a pYtslA+ka+SrhFrcLkdaia q+ CA02g26220 391 DRIEHQRRKVKLLSMLDEAHRRYNHYCEQMQMVVNSFDLVMGFGAAIPYTSLAQKAMSRHFRCLKDAIATQL 462 589******************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.5E-74	321	460	IPR006563	POX domain
Pfam	PF07526	5.4E-51	326	459	IPR006563	POX domain
PROSITE profile	PS50071	12.568	508	571	IPR001356	Homeobox domain
CDD	cd00086	9.84E-13	511	572	No hit	No description
SMART	SM00389	2.0E-9	511	575	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	513	578	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	514	577	IPR009057	Homeodomain-like
Pfam	PF05920	3.7E-18	528	567	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 741 aa Download sequence Send to blast
MGIATQLTTS PCVTSHNSKG HQYPVIHQVS ENLNSMSQDY HHHSLFSFPN GFEREQHHQQ 60 QQQQQQQHMA GQQIRRDKLR VQGFEPQSFE EETSGLPAVY ETAGMLSEMF NFPPGAAAPN 120 ATELIETQFN PNFRQPNPNL NPRPXXXAAM GNDQQLGYAK NHTPNAAESM QLFLMNPQPR 180 SPSPSPDPNS TSSRLHMLLP NPSSTSTLQG FPNPAEGSFG QFMTWGSTGA SAATATHHLN 240 NPNEIGGVNV AESQGLSLSL SSSLQHKAEE LQMSGETGGM LFFNQGGPST SGQFRYKNLN 300 MGGSGISPNI HQVHVGYGSS LGVVNVLRNS RYAKAAQELL EEFCSVGRGK FKKNNNKAAA 360 TNPNSYPSGG NSGGSNNETS SKDVPPLSAA DRIEHQRRKV KLLSMLDEAH RRYNHYCEQM 420 QMVVNSFDLV MGFGAAIPYT SLAQKAMSRH FRCLKDAIAT QLKHSCELLG EKDAGTSGLT 480 KGETPRLKML EQSLRQQRAF HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD 540 ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEDMYQQE AKEEEEGAGD EKSQSQNSGN 600 NIITQTPNSM SNSSSTNMTT ITTTAAAPTT TTALGAAETA TAATAITVTS SKRSLINAPD 660 SDPSLVPINS FSHNQATFPT NIHDPDAAXX XXXXXXGTTT NTHDHMGSTM IRFGTTAGDV 720 SLTLGLRHAG NLPENTHFFG *

Sequence ? help Back to Top

Protein Sequence Length: 741 aa Download sequence Send to blast

MGIATQLTTS PCVTSHNSKG HQYPVIHQVS ENLNSMSQDY HHHSLFSFPN GFEREQHHQQ  60
QQQQQQQHMA GQQIRRDKLR VQGFEPQSFE EETSGLPAVY ETAGMLSEMF NFPPGAAAPN  120
ATELIETQFN PNFRQPNPNL NPRPXXXAAM GNDQQLGYAK NHTPNAAESM QLFLMNPQPR  180
SPSPSPDPNS TSSRLHMLLP NPSSTSTLQG FPNPAEGSFG QFMTWGSTGA SAATATHHLN  240
NPNEIGGVNV AESQGLSLSL SSSLQHKAEE LQMSGETGGM LFFNQGGPST SGQFRYKNLN  300
MGGSGISPNI HQVHVGYGSS LGVVNVLRNS RYAKAAQELL EEFCSVGRGK FKKNNNKAAA  360
TNPNSYPSGG NSGGSNNETS SKDVPPLSAA DRIEHQRRKV KLLSMLDEAH RRYNHYCEQM  420
QMVVNSFDLV MGFGAAIPYT SLAQKAMSRH FRCLKDAIAT QLKHSCELLG EKDAGTSGLT  480
KGETPRLKML EQSLRQQRAF HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD  540
ADKHLLARQT GLSRNQVSNW FINARVRLWK PMVEDMYQQE AKEEEEGAGD EKSQSQNSGN  600
NIITQTPNSM SNSSSTNMTT ITTTAAAPTT TTALGAAETA TAATAITVTS SKRSLINAPD  660
SDPSLVPINS FSHNQATFPT NIHDPDAAXX XXXXXXGTTT NTHDHMGSTM IRFGTTAGDV  720
SLTLGLRHAG NLPENTHFFG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	517	574	5	62	Homeobox protein Meis2
3k2a_B	4e-16	517	574	5	62	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF406699	0.0	AF406699.1 Solanum tuberosum BEL1-related homeotic protein 13 (Bel13) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561190.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-171	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A2G2XIM2	0.0	A0A2G2XIM2_CAPBA; BEL1-like homeodomain protein 4
STRING	PGSC0003DMT400026172	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3341	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-140	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]