PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g27000
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28508.4 Da    PI: 9.7959
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g27000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.5e-28959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eys+
  CA02g27000  9 KRIENKISRQVTFSKRRCGLLKKANEISVLCDADVALIVFSTKGKLFEYST 59
                79***********************************************96 PP
2K-box97.61.8e-32801746100
       K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  +  ++   e+++ e+ kL ++ e Lqr++Rh++G+dL++Lsl+eLq+Le q+++slk+iRs+Kn+l++e+i+elqkkek+l+e+n+ ++kkl+e
  CA02g27000  80 MNPIDSDPKENWNLEYPKLMSRAELLQRNIRHYMGQDLDPLSLRELQSLELQIDTSLKRIRSRKNQLMHESISELQKKEKALHEQNNLINKKLKE 174
                 5556677789**********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.371161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-33291IPR002100Transcription factor, MADS-box
CDDcd002652.55E-39276No hitNo description
PRINTSPR004043.3E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-293859IPR002100Transcription factor, MADS-box
PfamPF014866.4E-2886172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.27888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010154Biological Processfruit development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRGRVELKR IENKISRQVT FSKRRCGLLK KANEISVLCD ADVALIVFST KGKLFEYSTD  60
SSMESILERY ERYSYAERKM NPIDSDPKEN WNLEYPKLMS RAELLQRNIR HYMGQDLDPL  120
SLRELQSLEL QIDTSLKRIR SRKNQLMHES ISELQKKEKA LHEQNNLINK KLKEKEKTQP  180
NSGQNSATFH VPPSHSHHQL VPNLSIGGAF GGTREMNIDG SGQAEYPGSN NNSTLMPPWM  240
LRHISNEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-19174173MEF2 CHIMERA
6byy_B3e-19174173MEF2 CHIMERA
6byy_C3e-19174173MEF2 CHIMERA
6byy_D3e-19174173MEF2 CHIMERA
6bz1_A3e-19174173MEF2 CHIMERA
6bz1_B3e-19174173MEF2 CHIMERA
6bz1_C3e-19174173MEF2 CHIMERA
6bz1_D3e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4148630.0KC414863.1 Physalis pubescens PFFL mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561266.10.0PREDICTED: truncated transcription factor CAULIFLOWER A isoform X2
SwissprotD7SMN61e-103FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A1U8FPW40.0A0A1U8FPW4_CAPAN; Agamous-like MADS-box protein AGL8-like protein
TrEMBLA0A2G3ABM00.0A0A2G3ABM0_CAPAN; truncated transcription factor CAULIFLOWER A isoform X2
STRINGSolyc02g089210.2.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]