PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g28240

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ZF-HD

Protein Properties

Length: 90aa MW: 9846.86 Da PI: 8.3825

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g28240	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99	3.6e-31	23	76	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY eC++NhAas+Gg++vDGC+E+mp+ +t+ +l+CaACgCHRnFHRreve+e CA02g28240 23 TVRYVECQRNHAASVGGYVVDGCREYMPD----STSGTLNCAACGCHRNFHRREVETE 76 79************************9....6788***************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	9.7E-27	24	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	4.3E-24	25	73	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.552	26	72	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-17	26	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MKKVMRRNDS SRNSTNSSFT VRTVRYVECQ RNHAASVGGY VVDGCREYMP DSTSGTLNCA 60 ACGCHRNFHR REVETEVASD CTSATSTTT*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269\|PubMed:21455630}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001234189.1	2e-51	mini zinc finger protein
Swissprot	Q9LJW5	2e-29	MIF2_ARATH; Mini zinc finger protein 2
TrEMBL	A0A2G2V060	5e-58	A0A2G2V060_CAPBA; Mini zinc finger protein 1
TrEMBL	A0A2G3ACA2	5e-58	A0A2G3ACA2_CAPAN; Mini zinc finger protein 1
TrEMBL	A0A2G3D9P7	5e-58	A0A2G3D9P7_CAPCH; Mini zinc finger protein 1
STRING	Solyc02g087970.1.1	8e-51	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1105	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18835.1	2e-25	mini zinc finger

Publications ? help Back to Top
Bollier N, et al. At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell, 2018. 30(1): p. 83-100 [PMID:29298836]