PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g28290
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 222aa    MW: 25448.3 Da    PI: 9.7272
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g28290genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1561.6e-48141821128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k........................................kvkaeekew 58 
                 + pGfrFhPtdeelv +yLk+kv++++l++ e ik+vdiyk++PwdLp k                                         ++++ekew
  CA02g28290  14 MLPGFRFHPTDEELVGFYLKRKVQQRSLPI-ELIKQVDIYKYDPWDLPsKkdnssacpyslgsfsifsfvaasilfhlclrsnfygrlhiLASTGEKEW 111
                 579***************************.89**************95489***************************999999988765556899** PP

         NAM  59 yfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 yf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ +glkk+Lvfy+gra +g ktdW+mhe+rl
  CA02g28290 112 YFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSdSTKCIGLKKSLVFYRGRAARGIKTDWMMHEFRL 182
                 ************************************955666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-191164IPR003441NAC domain
PROSITE profilePS5100548.27814213IPR003441NAC domain
PfamPF023651.8E-2516182IPR003441NAC domain
SuperFamilySSF1019411.57E-31105187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDDKSDVEKL DEVMLPGFRF HPTDEELVGF YLKRKVQQRS LPIELIKQVD IYKYDPWDLP  60
SKKDNSSACP YSLGSFSIFS FVAASILFHL CLRSNFYGRL HILASTGEKE WYFYCPRDRK  120
YRNSARPNRV TGAGFWKATG TDRPIYSSDS TKCIGLKKSL VFYRGRAARG IKTDWMMHEF  180
RLPTTNSESA PPKKFLDKNF PPNVGSLCSL LSPPIIHLRL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-451618217140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-127HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562276.11e-109PREDICTED: putative NAC domain-containing protein 94
SwissprotQ9FIW57e-80NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLA0A2G3D9M21e-108A0A2G3D9M2_CAPCH; Putative NAC domain-containing protein 94
STRINGPGSC0003DMT4000033431e-108(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.17e-82NAC domain containing protein 94