PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g28760
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family LBD
Protein Properties Length: 149aa    MW: 17004.4 Da    PI: 8.3708
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g28760genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.12.9e-3891091100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +CaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++++l++l++e+ + dam+s+++e+++r + Pv G+v+ i++l+qql+ +  el++++
  CA02g28760   9 SCAACKYQRRKCTPKCVLASYFPADQPKKFQNAHRLFGVRNIVRTLEQLDDEDqKADAMKSIIFESDMREKFPVFGCVECISHLRQQLQIALLELQYVN 107
                 6************************************************666649***********************************999999987 PP

      DUF260  99 ee 100
                  +
  CA02g28760 108 GQ 109
                 66 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.4988110IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-369105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MTGGTSRVSC AACKYQRRKC TPKCVLASYF PADQPKKFQN AHRLFGVRNI VRTLEQLDDE  60
DQKADAMKSI IFESDMREKF PVFGCVECIS HLRQQLQIAL LELQYVNGQL DIYKRRQQHS  120
SESSVGNGML MVPFFSSIED EYSRNHTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2621134114LOB family transfactor Ramosa2.1
5ly0_B4e-2621134114LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562288.11e-108PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS69e-37LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A2G3AC681e-107A0A2G3AC68_CAPAN; LOB domain-containing protein 27
STRINGXP_009795991.15e-64(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-39LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]