PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g29130
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family E2F/DP
Protein Properties Length: 373aa    MW: 41665.9 Da    PI: 8.5589
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g29130genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.51.3e-242085171
     E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                rk+ksL+ll+++flkl+ ++  ++v l+++a++L    v  +rRRiYDi+N+Le+++++++k+kn++rw+g
  CA02g29130 20 RKDKSLGLLCSNFLKLCDREGVDTVGLDNAADKL---GV--ERRRIYDIVNILESVGVLSRKAKNQYRWNG 85
                79*****************999************...**..****************************98 PP
2E2F_TDP69.24.8e-22142221170
     E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                 rkeksL +l+q+f+kl+++s+ + ++l+++a++L+ +      vk+k RR+YDi+NV+ +lnliek     + k+ +rw+
  CA02g29130 142 RKEKSLMILAQNFVKLFHCSNVDLISLDKAASALLGDihdpmAVKTKTRRLYDIANVFVSLNLIEKirspdNGKPVFRWI 221
                 79****************************************************************99999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-261886IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.56E-161983IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-272085IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.1E-212185IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-19140222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.8E-22142222IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023198.1E-17143221IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.1E-11144221IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSSSVHTEDS QWKNPSIYSR KDKSLGLLCS NFLKLCDREG VDTVGLDNAA DKLGVERRRI  60
YDIVNILESV GVLSRKAKNQ YRWNGYSAIP KAVDLLKKEG LKDLSTASST CHNVSNVIAC  120
NHSDVKETGE GNTSGLHKID NRKEKSLMIL AQNFVKLFHC SNVDLISLDK AASALLGDIH  180
DPMAVKTKTR RLYDIANVFV SLNLIEKIRS PDNGKPVFRW IAWKENRTSG SPAAATSDES  240
MRRTFGTEIT NTIPKRCRDD SSSDLMSNGQ VKRLKVAKDD ELKDKNQISA EQHDERGTKD  300
FVFGPFGPSS LPKSGVSGKE NLKHIQNLED LASKYYPQYQ NKAASELFAH FVDAWESWQV  360
EAANELHKQH EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-31192083222Transcription factor E2F8
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154131e-126AC215413.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0189G15, complete sequence.
GenBankHG9755141e-126HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561476.10.0PREDICTED: E2F transcription factor-like E2FF isoform X1
TrEMBLA0A2G3AC910.0A0A2G3AC91_CAPAN; Uncharacterized protein
STRINGSolyc02g087310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25222457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.22e-97DP-E2F-like 1