PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g29740

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 199aa MW: 22906.4 Da PI: 7.2153

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g29740	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.1	8.7e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl CA02g29740 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP
2	Myb_DNA-binding	35.1	3.2e-11	68	107	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++ + W++Ia++++ gRt++++k++w++ CA02g29740 68 RGNITPEEQLLIMELHA----K-WSKIAKHLP-GRTDNEIKNYWRT 107 78889999999999987....5.99*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-23	7	65	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.921	10	66	IPR017930	Myb domain
SuperFamily	SSF46689	4.04E-26	13	105	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-12	14	64	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-16	15	62	IPR001005	SANT/Myb domain
CDD	cd00167	5.22E-10	17	62	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-20	66	113	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.958	67	113	IPR017930	Myb domain
SMART	SM00717	1.9E-7	67	111	IPR001005	SANT/Myb domain
Pfam	PF00249	7.7E-10	68	107	IPR001005	SANT/Myb domain
CDD	cd00167	1.49E-9	72	107	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MDKRTCNSQD VEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWSKIA KHLPGRTDNE IKNYWRTRIQ KHIKQAENMN 120 RLSSDISDQH NNDQQASTSQ ASIGPPDTIE TYSGNNNNNN NIMGTNFHHQ GNFSTETNEN 180 IWSMEELWSM QLLNDATN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-21	15	113	7	108	B-MYB
1h8a_C	2e-21	12	113	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC182628	1e-123	KC182628.1 Petunia x hybrida cultivar P720 EOBI (EOBI) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561570.1	1e-138	PREDICTED: myb-related protein 340-like
Swissprot	P81396	4e-92	MYB40_ANTMA; Myb-related protein 340
TrEMBL	A0A2G3ABV7	1e-145	A0A2G3ABV7_CAPAN; Transcription factor MYB21
STRING	PGSC0003DMT400001278	1e-114	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27810.1	7e-78	myb domain protein 21

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]