PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g30000

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 164aa MW: 18337.6 Da PI: 7.2995

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g30000	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	9.2e-44	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++++ ++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++++ CA02g30000 11 PCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEIQAHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNA 109 7*********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.974	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASSSSYSNP PCAACKFLRR KCLPGCIFAP YFPPEEPQKF ANVHKIFGAS NVSKLLNEIQ 60 AHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQVIRL QKELDATNAD LMRYANREVN 120 NQQRNLNYGR SGIDQTHYGY CVPSYIPPNT TWNNPEADDD SNM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-66	2	121	2	121	LOB family transfactor Ramosa2.1
5ly0_B	2e-66	2	121	2	121	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562307.1	1e-121	PREDICTED: LOB domain-containing protein 25
Refseq	XP_016562308.1	1e-121	PREDICTED: LOB domain-containing protein 25
Refseq	XP_016562309.1	1e-121	PREDICTED: LOB domain-containing protein 25
Refseq	XP_016562310.1	1e-121	PREDICTED: LOB domain-containing protein 25
Swissprot	Q9FML4	1e-66	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1U8G0X9	1e-119	A0A1U8G0X9_CAPAN; LOB domain-containing protein 6
TrEMBL	A0A1U8G2V2	1e-119	A0A1U8G2V2_CAPAN; LOB domain-containing protein 25
TrEMBL	A0A2G2XHY6	1e-119	A0A2G2XHY6_CAPBA; LOB domain-containing protein 6
TrEMBL	A0A2G3D9X2	1e-119	A0A2G3D9X2_CAPCH; LOB domain-containing protein 6
STRING	XP_009597524.1	3e-94	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-69	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]