PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g30840
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 255aa    MW: 28959.9 Da    PI: 9.673
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g30840genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003396118223
                 EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                 +C+ C+++++++ +L  H +  H
  CA02g30840  96 SCSVCSRVYPTSRLLSIHVSEaH 118
                 6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.286893IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807093IPR007087Zinc finger, C2H2
SMARTSM003555.495118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097118IPR007087Zinc finger, C2H2
SMARTSM003550.38133158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280135158IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMEFETQRE LGFPFWKPIR RRFGPDDPFF AYGNIQRELL AKQIALDLTE EEKQLVQNII  60
TDEEISNLFC PIIGCGARMK SLDDFEDHYA TRHTASCSVC SRVYPTSRLL SIHVSEAHDS  120
FFQAKAARGF PMYECLVEGC GVKLKSYKSR QQHLVDKHKF SASYEFFRKA RPSKKQRQKL  180
QYKQASYQTQ ETSSAMQVEE ERIDNLVSAV SKLTTADSPS AISFGRSRTR GLSFVPRAVN  240
RQRGSVTSTG GTKK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-132HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561735.11e-179PREDICTED: zinc finger protein 511
TrEMBLA0A2G3ACY00.0A0A2G3ACY0_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000520621e-174(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102112022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-111zinc ion binding;nucleic acid binding;zinc ion binding