PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g31190
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 224aa    MW: 24657.3 Da    PI: 6.4979
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g31190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00055274123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C +C++ F ++  L  H++ H
  CA02g31190 52 FSCLYCSRKFCTSQALGGHQNAH 74
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.04E-54979No hitNo description
PROSITE profilePS5015710.975279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MADPSQQQLV YDFWNQLQSS NSSTTDMVDP SSSIIPIPKP KPKVPSASSR MFSCLYCSRK  60
FCTSQALGGH QNAHKRERAA SRRNMFSTPT TAAAATDHTN NNMVRLHFLQ NNDNMDPSSL  120
IMPQQNIIIH DDAAAANTYG NPNYNMMMTG NANYCCFQQT PPNVNNFNPF SSSSSSHDGF  180
YTPPDLGHHV YFATADGDAA PSTPQDLSTI DERQLNLDLT LRL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-56HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016558551.11e-131PREDICTED: uncharacterized protein LOC107858420
TrEMBLA0A2G3ACW41e-164A0A2G3ACW4_CAPAN; Zinc finger protein KNUCKLES
STRINGPGSC0003DMT4000521701e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92381723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.16e-16C2H2 family protein