PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g31250
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 217aa    MW: 24874.7 Da    PI: 4.1849
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g31250genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.88.6e-1814104187
                 EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k+l +sdv++++r+v+pkk ae++    +   +e++ +t++d +g  +W+++++y  +++s++yvl+ ++ +F + ++L++gD + ++++++
  CA02g31250  14 FDKQLQNSDVSSLRRIVVPKKAAERYlpalE--IKEGFPITMNDMDGiHVWSFRYRYwpNNSSRMYVLE-NTGDFIQTHELRQGDYFALHYNDQ 104
                 89**************************544..557788********9*********888899999999.******************998754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2311107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-1912108IPR015300DNA-binding pseudobarrel domain
CDDcd100177.29E-2012101No hitNo description
SMARTSM010197.2E-1314116IPR003340B3 DNA binding domain
PROSITE profilePS508638.95214116IPR003340B3 DNA binding domain
PfamPF023622.8E-1514104IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MLQVLEPTGF KFLFDKQLQN SDVSSLRRIV VPKKAAERYL PALEIKEGFP ITMNDMDGIH  60
VWSFRYRYWP NNSSRMYVLE NTGDFIQTHE LRQGDYFALH YNDQKQIYGI EARKAGSGPV  120
FRGYEAEDVI LTDYAQATDD GNGNGVLKNE AEMDMSSFYF PAMDNEMDMS FIYDTSFWNE  180
PAFDFVGGPM TYYSTNVNPT PSFGSIEDSF PVDDFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A6e-46101161107B3 domain-containing transcription factor FUS3
6j9b_D6e-46101161107B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-110HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016561788.11e-159PREDICTED: B3 domain-containing transcription factor FUS3
TrEMBLA0A2G3DA141e-157A0A2G3DA14_CAPCH; Uncharacterized protein
STRINGSolyc02g094460.1.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80452125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.18e-51B3 family protein