PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g05960
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 346aa    MW: 37489.3 Da    PI: 6.0435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g05960genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10194238554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  CA03g05960 194 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 238
                 99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.13E-11187243No hitNo description
SuperFamilySSF474591.1E-15187249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.323189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-15191249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7194238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MPQSTKTVPF PSFQFHFSIL KTLTLLLTLN FFYFNSPEKI SGMSNNQTEG YADDFIEQIL  60
AIPSYTGLPV ADVGNTPSDT ASFNSSGGGS AGGGGVLQQP LFPLGLSLDN GRDDVSDAGG  120
AYAVKHEREG MNIGSLYAGL EHLQSHAVRH SVPPVHHVQP FQGPPTTSTT VTVPQPPSIR  180
PRVRARRGQA TDPHSIAERL RRERISERIK ALQELVPSCN KTDRAAMLDE ILDYVKFLRL  240
QVKVLSMSRL GGASAVAQLV ADIPLQSVEG DSGESRSNQH IWDKWSNADT EREVAKLMEE  300
DVGAAMQYLQ SKSLCIMPIS LAALIYPTQQ PDDQSLVKPE PAAPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198203RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566557.10.0PREDICTED: transcription factor UNE12-like
SwissprotO227681e-80UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2G2ZV040.0A0A2G2ZV04_CAPAN; Transcription factor UNE12
STRINGSolyc09g083220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.37e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]