PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g06220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 158aa    MW: 18679.4 Da    PI: 9.9984
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g06220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-0781127455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h + Er RR++ +++++ L +llP       +K +K +i++ A + I +Lq
  CA03g06220  81 KHMIKERIRREKQKQSYSALHKLLPMG-----TKGEKNAIVQTAARRIEELQ 127
                 68999********************97.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-1168142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.75377126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-581127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.60E-681128No hitNo description
Gene3DG3DSA:4.10.280.103.2E-781142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEEFFQVSNW FCDDETYNNF EVNQSAFVSF ESKLSEGFGV YRYGNVSTNH RNMNKRVMEF  60
LKKNWISKNG QVKMEKEKGH KHMIKERIRR EKQKQSYSAL HKLLPMGTKG EKNAIVQTAA  120
RRIEELQKYK EILKKRNDEL EMMILPEKDS NKISSCN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2585371e-112AB258537.1 Nicotiana tabacum WIN4 mRNA for basic helix-loop-helix protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016568146.11e-113PREDICTED: transcription factor bHLH92-like
SwissprotQ9FIX54e-22BH092_ARATH; Transcription factor bHLH92
TrEMBLA0A2G2ZV241e-112A0A2G2ZV24_CAPAN; Transcription factor bHLH92
STRINGSolyc09g083360.2.15e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA124631821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-24bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]