PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g07110
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family CPP
Protein Properties Length: 765aa    MW: 82949.4 Da    PI: 6.6856
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g07110genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.12.6e-16463501240
         TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                  +k+CnCkkskClk+YCeCfaag++C e C C+dC+Nk 
  CA03g07110 463 ACKRCNCKKSKCLKLYCECFAAGVYCVEPCACQDCFNKP 501
                 589**********************************96 PP
2TCR51.12.6e-16548586139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCkks ClkkYCeC++ g+ Cs +C+Ce+CkN 
  CA03g07110 548 RHKRGCNCKKSGCLKKYCECYQGGVGCSINCRCEGCKNA 586
                 589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-17462503IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.777463588IPR005172CRC domain
PfamPF036389.4E-12465500IPR005172CRC domain
SMARTSM011147.5E-18548589IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.4E-12550586IPR005172CRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009934Biological Processregulation of meristem structural organization
GO:0048444Biological Processfloral organ morphogenesis
GO:0051302Biological Processregulation of cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MFRKLSHSEG LLFTSLQESP FSNFLNNLSP IKPVKSAHFP QSLNTLSFGS IPSVFTSPHV  60
SSVRESRFLR RHLLSDPSKP EFASDDSAKA DADEGMLDGV NNSNDAKESF GSEISVVEAL  120
ATPSHGSKLA VELSRTLNYD SPSTLPTGNM RGKSLAEFTG SSVTYIPLVQ DMSGKGLVRC  180
EVNMEGTNEI DPNKEASGCD WENLICDATD LLIFDSPGDP EAFTKATGPH FRPFGFVSKE  240
MQNMQGSSQV STSECGGDGS ETENPSTQPA DETQVKEYAE TQNVKPDSSL TNDGMGAGQS  300
EKTDNEMVST LYRGMRRRCL VFEMVGSRRK HVDEGSGSSA VQDTDGNLAC NEKQLVPYKT  360
VNESSRCILP GIGLHLNALA ASSKDGKVVK HETSASGKQL LITSGSAVSH HPSVTGQESL  420
KKEACPFLSL MIIFCSCNLF SLYLYVITNC FCRRRLEPGE GEACKRCNCK KSKCLKLYCE  480
CFAAGVYCVE PCACQDCFNK PIHEDTVLAT RKQIESRNPL AFAPKVIRSA DSVSETGDDS  540
SKTPASARHK RGCNCKKSGC LKKYCECYQG GVGCSINCRC EGCKNAFGRK DGSVFIGTDG  600
DAEEEETTEA FEKSIVDRTS HKNILHSDVE QNPDFIVPAT PLAFRRPPMQ LPLSLKNKPP  660
RSSFLCIGSS SGLFAGQGVV GRPDFFPPQP KFEKPFESIQ EDEMPEILQQ GGTSSPISGI  720
KTASPNRKRV SPPHCDFANS PGRRSSRKLI LQSIPSFPSL TPNP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-1846558512120Protein lin-54 homolog
5fd3_B2e-1846558512120Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-172HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565918.10.0PREDICTED: protein tesmin/TSO1-like CXC 3 isoform X1
TrEMBLA0A2G3CSX50.0A0A2G3CSX5_CAPCH; Uncharacterized protein
STRINGPGSC0003DMT4000820980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-146TESMIN/TSO1-like CXC 2