PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g08260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 197aa    MW: 22627 Da    PI: 10.1731
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g08260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.8e-114193155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +++ h  +Er RR+++ +  + Lr+l+P  +   ++K s ++  + Av+YIk+Lq
  CA03g08260 41 KKVVHRNVERHRRKEMANLVNSLRSLIPIEF--IKGKRSASDHMQVAVNYIKHLQ 93
                6788*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.39E-73897No hitNo description
SuperFamilySSF474592.22E-1239103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.3984092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-94193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-1041107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00334698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MPGQFQTSCD RPYKSPVGTK STNLDRNNKE GLTRNESNKL KKVVHRNVER HRRKEMANLV  60
NSLRSLIPIE FIKGKRSASD HMQVAVNYIK HLQKNIQELD NTRKNIKNII SLDDQNKSST  120
NITFQKNNIC VTVNKCEDGM EILINVNNSH KEEIFSLSKV LRWLLEEGLN VVSCVNSKQD  180
ECSLIMIQCQ VRKFKT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-114HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567971.11e-135PREDICTED: transcription factor bHLH36-like
TrEMBLA0A2G2ZW301e-135A0A2G2ZW30_CAPAN; Uncharacterized protein (Fragment)
STRINGXP_009757518.17e-72(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.14e-28bHLH family protein