PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g12030
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 430aa    MW: 47042.2 Da    PI: 6.946
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g12030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.5e-3162119260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkgsefprsYY+Ct+++C+vkk  er   d++++ei+Y+g+H+h+k
  CA03g12030  62 EDGYNWRKYGQKLVKGSEFPRSYYKCTYPNCEVKKIFERPP-DGQITEIVYKGSHDHPK 119
                 7***************************************9.***************85 PP
2WRKY105.72.4e-33245303159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct a+Cpv+k+ver+++dpk+v++tYeg+Hnh+
  CA03g12030 245 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNARCPVRKHVERASHDPKAVITTYEGKHNHD 303
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-2650120IPR003657WRKY domain
PROSITE profilePS5081122.04556120IPR003657WRKY domain
SuperFamilySSF1182903.27E-2459120IPR003657WRKY domain
SMARTSM007742.6E-3261119IPR003657WRKY domain
PfamPF031067.1E-2462118IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.1E-37230305IPR003657WRKY domain
SuperFamilySSF1182904.58E-29237305IPR003657WRKY domain
PROSITE profilePS5081137.792240305IPR003657WRKY domain
SMARTSM007746.3E-38245304IPR003657WRKY domain
PfamPF031069.1E-26246303IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MPNSKELSLP TPVCLDASLI STAAAATDNE EVNQRGQSNP SSHRSSADNK NVSSVTADRS  60
SEDGYNWRKY GQKLVKGSEF PRSYYKCTYP NCEVKKIFER PPDGQITEIV YKGSHDHPKP  120
QPNHRFTPGA LTSVQEDRGE REACLTGQEV IPLSGLSFLE DKFNTNAQTS NTEPSGTPLS  180
PQQADDDGLE GTVSQLHSSN DQMDEDDSFA KRSRKMDGVM DIIPVVKPIR EPRVVVQTVS  240
EVDILDDGYR WRKYGQKVVR GNPNPRSYYK CTNARCPVRK HVERASHDPK AVITTYEGKH  300
NHDVPTARTN SHEMAGSAPV TGSSRVRVEE NGAISLDLGV GIGHGMENRR NGQLHTLPAE  360
TVRSQGQVSS SIVMVVQPAA VAACYSIVNG GMNRFGTIEN RVQGTGFETL PLQSSAQYPQ  420
NYGMILLGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-3662305877Probable WRKY transcription factor 4
2lex_A2e-3662305877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111230.0AB711123.1 Solanum tuberosum StWRKY10 mRNA for transcription factor, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565269.10.0PREDICTED: probable WRKY transcription factor 20 isoform X3
SwissprotQ93WV01e-123WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A2G2ZWW20.0A0A2G2ZWW2_CAPAN; Putative WRKY transcription factor 33
STRINGPGSC0003DMT4000766700.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-127WRKY family protein