PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g12140

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 234aa MW: 26718.4 Da PI: 8.6739

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g12140	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.9	8.4e-11	17	48	12	43
HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsst 43 + +R ++KK eE S+LC ++vaviifs++ CA03g12140 17 ILDRRTISLFKKIEEFSILCSVDVAVIIFSPE 48 45567779**********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.6E-4	1	57	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.554	4	46	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.19E-13	6	90	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-11	10	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSRKITSNSD ENVRNSILDR RTISLFKKIE EFSILCSVDV AVIIFSPEKN QPVVWKSSNL 60 TKEVLIRYFS FSEFERIKKL IIHEKYLSKK VDKKKEQVNN IEKMNEEKEI KFLFNQLVQG 120 KCFTDFDSKN IKGLLKFIAT TMDKINERKE QFNLQQQPSH PPNSPSNFKL GEENVTQSPS 180 SIEDLINDMW FVETTMASNQ NFIGLGGESS SKSASMTGDG LNAKDDGRSK DLN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567913.1	1e-169	PREDICTED: agamous-like MADS-box protein AGL86
TrEMBL	A0A1U8GGR3	1e-168	A0A1U8GGR3_CAPAN; agamous-like MADS-box protein AGL86
STRING	PGSC0003DMT400096078	4e-72	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40210.1	5e-15	AGAMOUS-like 48