PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g12790
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 177aa    MW: 20402 Da    PI: 9.7553
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g12790genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.34e-091048947
                     HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     + +++ + +++G+g+W+ I+++m   Rt+ q+ s+ qky
       CA03g12790 10 HRRFLMGLEKYGKGDWRNISKKMVISRTPTQVASHAQKY 48
                     789*********************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.365153IPR017930Myb domain
SuperFamilySSF466891.95E-10952IPR009057Homeodomain-like
CDDcd001676.35E-61048No hitNo description
PfamPF002492.1E-71048IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-121052IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-61355IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLIEFFKIWH RRFLMGLEKY GKGDWRNISK KMVISRTPTQ VASHAQKYYQ RQISGGKDKR  60
RPSIHDITTV HFTTDATSQN NLAYNINSLS KEKFYATSSS FQKFTTTTDI VNCWNASLLS  120
EHVDLMDFGS LYGSSPFVAY PYKIASQYWD EHGANSITLS GNPQLQFQST RYQIWD*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564871.11e-122PREDICTED: transcription factor DIVARICATA-like isoform X1
TrEMBLA0A1U8G0H11e-120A0A1U8G0H1_CAPAN; Transcription factor DIVARICATA
TrEMBLA0A2G2ZWT71e-120A0A2G2ZWT7_CAPAN; transcription factor DIVARICATA-like isoform X1
STRINGSolyc03g096350.2.19e-88(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.24e-33MYB family protein