PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g12800
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 151aa    MW: 17241.7 Da    PI: 6.2596
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g12800genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.12.2e-092267346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++  a++ +  +   +W ++a++++ g+t  ++ + +  
       CA03g12800 22 EWTKEENKQFESAIAIYDENtpnRWFKVAAHIP-GKTVIDVMNQYKE 67
                     5******************9*************.********99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.0E-111971IPR001005SANT/Myb domain
CDDcd001678.04E-102269No hitNo description
Gene3DG3DSA:1.10.10.606.1E-62269IPR009057Homeodomain-like
SuperFamilySSF466898.22E-132276IPR009057Homeodomain-like
PfamPF002492.6E-72367IPR001005SANT/Myb domain
PROSITE profilePS500906.8992369IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
METLFSSNSF LPNSSWMSKS IEWTKEENKQ FESAIAIYDE NTPNRWFKVA AHIPGKTVID  60
VMNQYKELVA DVCDIEAGLV PNPGYFGSSI TLEFVDHCGL QTFRKRGSRS SDQERKKGVP  120
WTEEEHRCIL FLPSPRAKMI FLMNSLNIIF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1423851173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564872.11e-91PREDICTED: transcription factor DIVARICATA-like isoform X2
SwissprotQ8S9H77e-37DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1U8G0923e-90A0A1U8G092_CAPAN; transcription factor DIVARICATA-like isoform X2
STRINGPGSC0003DMT4000534333e-76(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.22e-42MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]