PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g13030
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 171aa    MW: 19204.9 Da    PI: 9.148
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g13030genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.8e-191865249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i nk + +vtfskRr g++KK + +SvLC+a++avi+ s+tgk++ +
  CA03g13030 18 KIVNKNRLKVTFSKRRGGLFKKENQISVLCGAQIAVIVKSPTGKIFLF 65
                789*****************************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.71E-24980IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.366969IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-27968IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-171131IPR002100Transcription factor, MADS-box
PfamPF003193.9E-191865IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
METSKGKNMG RQKIAIEKIV NKNRLKVTFS KRRGGLFKKE NQISVLCGAQ IAVIVKSPTG  60
KIFLFGNPSV DSVIRQFENR GFGEDEFTAA GEKGELQNSN WWEDVYLENL GLEELKKCRV  120
TMQVLKNNLL KKTNDYDHSG VVNSYDDVLI SNLTLDQFGG LPVCHYDRSN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mnm_A2e-133801087PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
1mnm_B2e-133801087PROTEIN (MCM1 TRANSCRIPTIONAL REGULATOR)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567075.11e-117PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8G7F51e-116A0A1U8G7F5_CAPAN; Uncharacterized protein
TrEMBLA0A2G2ZX731e-116A0A2G2ZX73_CAPAN; agamous-like MADS-box protein AGL62
STRINGXP_009770753.11e-49(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-22AGAMOUS-like 62