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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CA03g14140 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 246aa MW: 27587.4 Da PI: 8.4867 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 45.1 | 1.8e-14 | 58 | 104 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r+h+e+E+rRRdriN +++Lr+l+P++ +K++Ka+ L +++++k+L
CA03g14140 58 RSHSEAEKRRRDRINAQLSTLRKLIPTS-----EKMDKAALLGSVIDHVKDL 104
78*************************9.....8****************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 16.444 | 55 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 4.7E-12 | 58 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 2.0E-15 | 58 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.03E-11 | 58 | 105 | No hit | No description |
| SuperFamily | SSF47459 | 7.07E-14 | 58 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.2E-13 | 61 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd04873 | 3.54E-6 | 152 | 203 | No hit | No description |
| Gene3D | G3DSA:3.30.70.260 | 4.3E-4 | 152 | 195 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 246 aa Download sequence Send to blast |
MDNSICSEYW PQTDDLNQDS LFSLPQIPNI TSFQLQNYPC YFPECSESFQ ERTASASRSH 60 SEAEKRRRDR INAQLSTLRK LIPTSEKMDK AALLGSVIDH VKDLKGRSTE ISKVLNTPTD 120 IDEVTIEHLN EEENIGSASA SKRKDSVILK ASFSCNDRPE LFSELKRAIK NLKLTVMEAD 180 ITSLGGRIKG IFVLCPGENS AKDVCMNSLK HSLRVVLCRI AITPSTSNNR IKSKRQRFFL 240 PAQFS* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 231 | 236 | KSKRQR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_016564908.1 | 1e-179 | PREDICTED: transcription factor bHLH51 | ||||
| TrEMBL | A0A2G2ZWR4 | 1e-180 | A0A2G2ZWR4_CAPAN; Uncharacterized protein | ||||
| STRING | PGSC0003DMT400071293 | 1e-123 | (Solanum tuberosum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA5820 | 22 | 35 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G40200.1 | 8e-43 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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