PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g15410

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 171aa MW: 19745.8 Da PI: 9.1428

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g15410	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.9	1.3e-55	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL+kk++ +k++l +vikevd+yk+ePwdL++ ++ aee+ ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k CA03g15410 7 VPPGFRFHPTDEELVDYYLRKKITLRKIDL-DVIKEVDLYKIEPWDLQElcRIGAEEQhEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS-K 103 69**************************.9***********954555554445**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 + l+g++ktLvfykgrap+g k+dW+mheyrle CA03g15410 104 HDLIGMRKTLVFYKGRAPHGLKSDWIMHEYRLE 136 899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-57	5	141	IPR003441	NAC domain
PROSITE profile	PS51005	54.255	7	160	IPR003441	NAC domain
Pfam	PF02365	7.3E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKIT LRKIDLDVIK EVDLYKIEPW DLQELCRIGA 60 EEQHEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PHGLKSDWIM HEYRLETDPN GAPQASCSLN LACLAKLFKI CLVSKCFSGN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-50	6	135	14	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-99	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564823.1	1e-106	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_016564824.1	1e-106	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_016564825.1	1e-106	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_016564826.1	1e-106	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	6e-91	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2G2ZYJ1	1e-105	A0A2G2ZYJ1_CAPAN; NAC domain-containing protein 7
STRING	XP_009773837.1	1e-100	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	4e-83	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]