PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g16300
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HSF
Protein Properties Length: 327aa    MW: 36370.6 Da    PI: 4.827
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g16300genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.48.5e-37261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+++ed++++++isw+e+g++f+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF ++sF++g+k+ll +i+
    CA03g16300  26 FLTKTYQLIEDQSIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFGNDSFRRGEKNLLIDIQ 113
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
    CA03g16300 114 RRKV 117
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.3E-3818110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.81E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MTPQPDRNRG EAPAAGEMPR SVPTPFLTKT YQLIEDQSID DVISWNEDGS TFIVWNPTEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFGNDS FRRGEKNLLI DIQRRKVATP  120
IVATPCAATT AVVTVVASPP PPPAQPPLAV STTDSCEEQV VTSNSSAGST AELLGQNERL  180
RIENLQLNKE LNQMKKLCGN IYNMMSNYNA DCSTIGNNQS AESISPALKP LDLLRTERAV  240
DQSGRTVCDE ENRVEPEAEA RLFGFSIGMK RIREGEVAMA EHYQDLRLQQ PGVDMKSEPS  300
DQGSNGDNEE TSWLLHCGGR NQRTCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-241411520129Heat shock factor protein 1
5d5v_B5e-241411520129Heat shock factor protein 1
5d5v_D5e-241411520129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754423e-74HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564681.10.0PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_016564682.10.0PREDICTED: heat stress transcription factor B-2a-like
RefseqXP_016564683.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW44e-85HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1U8G7L00.0A0A1U8G7L0_CAPAN; heat stress transcription factor B-2a-like
STRINGSolyc03g026020.2.11e-164(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-83heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]