PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g17370

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Protein Properties

Length: 77aa MW: 8587.97 Da PI: 9.1345

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g17370	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.6	1.4e-10	4	64	34	96
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +t+ l+ +++r W v + k g+ vl+++W+ F+ gLk gD ++F+l++ s++ +v+v CA03g17370 4 ITIYLKGPDNRPWPVIY--HEKFGSKVLAGNWELFAAVYGLKPGDECLFQLSDLSKRMVNVHV 64 79*************..9999999**********************9765888666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	10.348	1	66	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	8.83E-12	3	68	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.78E-10	3	64	No hit	No description
Pfam	PF02362	1.6E-7	4	64	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.1E-9	5	63	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MGRITIYLKG PDNRPWPVIY HEKFGSKVLA GNWELFAAVY GLKPGDECLF QLSDLSKRMV 60 NVHVAHKVDV TQTTLS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235796	4e-76	AC235796.1 Solanum lycopersicum chromosome 3 clone C03HBa0052G03, complete sequence.
GenBank	BT013851	4e-76	BT013851.1 Lycopersicon esculentum clone 132811R, mRNA sequence.
GenBank	HG975442	4e-76	HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBank	HG975515	4e-76	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564752.1	5e-47	PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2
Refseq	XP_016564753.1	5e-47	PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2
Refseq	XP_016564754.1	5e-47	PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2
TrEMBL	A0A1U8FZX8	1e-45	A0A1U8FZX8_CAPAN; B3 domain-containing protein Os02g0598200-like isoform X2
TrEMBL	A0A1U8G9P0	1e-45	A0A1U8G9P0_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400079658	3e-41	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2210	23	52