PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g17380
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 418aa    MW: 46454.9 Da    PI: 6.3063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g17380genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.42e-1610713398
                -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                +++  led+sg++W+v +  ++++g+  +++GW+ F +++gLk gDf+vF++++ + f  vv+++ 
  CA03g17380 10 DQETYLEDSSGQRWRVGI--CNHKGSLAIRQGWRTFSSEHGLKMGDFLVFHYIRGQHF--VVQIYG 71
                45789*************..*********************************97888..999876 PP
2B332.81.2e-103204051096
                 HHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
          B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                 v  ++ lvlp +  +   g kk + +t+ l+ +++r W v +    + g+ vl+++W+ F+   gLk gD ++F+l++ s++ ++v+v
  CA03g17380 320 VDGRNFLVLPQSWPQVLsGRKKMGRITIYLKGPDNRPWPVIY--HETFGSKVLAGNWELFAAVYGLKPGDECLFQLSDLSKRMFNVHV 405
                 5667889999999855588889999*****************..999999*************************9765888777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010193.5E-4173IPR003340B3 DNA binding domain
PROSITE profilePS5086313.972173IPR003340B3 DNA binding domain
SuperFamilySSF1019369.61E-17175IPR015300DNA-binding pseudobarrel domain
CDDcd100179.79E-14170No hitNo description
PfamPF023621.3E-13970IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-161077IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.995311409IPR003340B3 DNA binding domain
SMARTSM010190.22314407IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-9318406IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-11320409IPR015300DNA-binding pseudobarrel domain
CDDcd100173.36E-10320405No hitNo description
PfamPF023623.9E-8321405IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
FARLVSHLTD QETYLEDSSG QRWRVGICNH KGSLAIRQGW RTFSSEHGLK MGDFLVFHYI  60
RGQHFVVQIY GTSGCEKINF YNDTHRGKKR PRTNSTATSH DELSPETVIN VRRKSNSTPS  120
DTAVPESERA GHQPVTTTFA SNIDADTGER QIIPQEEGSN DVLQSENGPH NHIDTISQRE  180
SSSVDGAPFE MEFLTLKAPS LDRDITQTEK ISEPVNDISV LGQTDENGHH MGLISSISLK  240
SAENVAKETR VDMQELKEMA TKTHCPPKKL NGKEPKITEK DGQGYPESVI VNNMAIKSDP  300
ADSGDTSISD DDSFSCLLQV DGRNFLVLPQ SWPQVLSGRK KMGRITIYLK GPDNRPWPVI  360
YHETFGSKVL AGNWELFAAV YGLKPGDECL FQLSDLSKRM FNVHVAHKVD VTQTTLS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138510.0BT013851.1 Lycopersicon esculentum clone 132811R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564743.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564744.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564745.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564746.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564747.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564749.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564750.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564751.10.0PREDICTED: uncharacterized protein LOC107863377 isoform X1
RefseqXP_016564752.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2
RefseqXP_016564753.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2
RefseqXP_016564754.10.0PREDICTED: B3 domain-containing protein Os02g0598200-like isoform X2
TrEMBLA0A1U8FZX80.0A0A1U8FZX8_CAPAN; B3 domain-containing protein Os02g0598200-like isoform X2
TrEMBLA0A1U8G0V20.0A0A1U8G0V2_CAPAN; uncharacterized protein LOC107863377 isoform X1
TrEMBLA0A1U8G9P00.0A0A1U8G9P0_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000796580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-08B3 family protein