PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g18340

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 757aa MW: 84085 Da PI: 7.1129

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g18340	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.6e-05	77	98	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C+ F ++ n++rH r+H CA03g18340 77 KCEKCTWEFYSPINYRRHVRLH 98 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	78	98	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MPVAKLSMGG VTPAAMKADE GNDSLDTLIR QAIGKEPLFS FSRTGDGPVQ WFQLLHGLEQ 60 QDNAGGWPML TPVKFQKCEK CTWEFYSPIN YRRHVRLHRR ALNFDKESRK FRDLLGAFWD 120 KLSLDEIKEV VSLHDVSIKD LSGSSLVQDL AASMRKPAVW TLPQDYYKAG LALLELIQAT 180 PPKLTSQEVF SILDDASERT FLCAGTAESV QKYVFDGDAA KKGLELKNLV ACTSFLFEQK 240 LVKAWFADKD AEALRCQKLL FEEEEAAQKK QAELLERKKL KKLRQKEQRA REQSNWVRGD 300 LEVPVDSFDV PMAESSILSA AVSDSNSSTP EVSDDVSSSI ELVQFSNNED MYIEAQLDLS 360 RQHLDLVEIQ DVEPPQVSAH NRRHFPHSQW QVPKSQRMGR NGFHNNLNHQ VQKLELVQKH 420 GVLKDRGAPV NSSKVWTRKV RVLNGERVRP EPQKEAINQN QSTCEVMIGS ISVPMKNCST 480 HGRGNCPAVE FDSTEPAVPK KGSPSVSVEN CSLHGQDNCP SIERENLDGT ERAMPEKCNL 540 VVKPAKQDAL QGGSNGAAVK LWRSVSRHGS GQPPEEAVIT EKLDNPASST ESSLQFCSID 600 NPIDKSKNYT SQVSDGNVHQ GLAFCSVSAK AFLSQSMFPC CYPCFSLKFV PTYFPIHFCL 660 TCMKMNVGWK EAISGDHVTL VLSNDTEASG HPDAQNGCSE AAPASDDQEH DILVKADNQR 720 ANTGVPNLSS NGNSKVKFRQ KPDKSIKTRY IPKKKP*

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MPVAKLSMGG VTPAAMKADE GNDSLDTLIR QAIGKEPLFS FSRTGDGPVQ WFQLLHGLEQ  60
QDNAGGWPML TPVKFQKCEK CTWEFYSPIN YRRHVRLHRR ALNFDKESRK FRDLLGAFWD  120
KLSLDEIKEV VSLHDVSIKD LSGSSLVQDL AASMRKPAVW TLPQDYYKAG LALLELIQAT  180
PPKLTSQEVF SILDDASERT FLCAGTAESV QKYVFDGDAA KKGLELKNLV ACTSFLFEQK  240
LVKAWFADKD AEALRCQKLL FEEEEAAQKK QAELLERKKL KKLRQKEQRA REQSNWVRGD  300
LEVPVDSFDV PMAESSILSA AVSDSNSSTP EVSDDVSSSI ELVQFSNNED MYIEAQLDLS  360
RQHLDLVEIQ DVEPPQVSAH NRRHFPHSQW QVPKSQRMGR NGFHNNLNHQ VQKLELVQKH  420
GVLKDRGAPV NSSKVWTRKV RVLNGERVRP EPQKEAINQN QSTCEVMIGS ISVPMKNCST  480
HGRGNCPAVE FDSTEPAVPK KGSPSVSVEN CSLHGQDNCP SIERENLDGT ERAMPEKCNL  540
VVKPAKQDAL QGGSNGAAVK LWRSVSRHGS GQPPEEAVIT EKLDNPASST ESSLQFCSID  600
NPIDKSKNYT SQVSDGNVHQ GLAFCSVSAK AFLSQSMFPC CYPCFSLKFV PTYFPIHFCL  660
TCMKMNVGWK EAISGDHVTL VLSNDTEASG HPDAQNGCSE AAPASDDQEH DILVKADNQR  720
ANTGVPNLSS NGNSKVKFRQ KPDKSIKTRY IPKKKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	282	ERKKLKKL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	0.0	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564580.1	0.0	PREDICTED: uncharacterized protein LOC107863256
TrEMBL	A0A2G2ZZ66	0.0	A0A2G2ZZ66_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400040843	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3722	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-100	C2H2-like zinc finger protein