PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g19220
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 366aa    MW: 40809.6 Da    PI: 6.4576
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g19220genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.53.2e-29146207159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDg++WrKYGqK++ g+++pr+YYrCt +   gC ++k+v+rs+edp+++e+tY+g+H+++
  CA03g19220 146 LDDGFSWRKYGQKDILGAKHPRGYYRCTLRhvqGCLATKQVQRSDEDPTIFEVTYRGRHTCS 207
                 59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.02141204IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.0E-28144207IPR003657WRKY domain
SuperFamilySSF1182901.16E-25145208IPR003657WRKY domain
SMARTSM007742.9E-41146208IPR003657WRKY domain
PfamPF031069.4E-27147206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDNYGADNTN VEFNRIINEL TQGRDLVQQL QLHLNAPNYN SSASFENTRE ILLHNIQSKF  60
DKALSILQYN STTGDNSNSP LTHSTSPAIP VFGVSDSPRS SPPHSEDSDR DLESKDPHAT  120
RKRKSTTPRW TKQVQIHPGA PLEGTLDDGF SWRKYGQKDI LGAKHPRGYY RCTLRHVQGC  180
LATKQVQRSD EDPTIFEVTY RGRHTCSQGG GGGASASNVH PAPLPLVVTI PQNQEPNLGN  240
HEQYQLIPAP HQNSPEILLD FQKNLSISKD DFNFNTHHDH PNNVPYIPPY SNFPSSSSSH  300
VNTDHQDYTF VANFSTIPIN NFVENFPPSS NNMSAGTSQM NNADYQFNSM GFESNFPYNY  360
QGFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-20146206868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119124TRKRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567798.10.0PREDICTED: probable WRKY transcription factor 30
TrEMBLA0A2G2ZZN70.0A0A2G2ZZN7_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000235020.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117431922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-49WRKY family protein