PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g19970

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 186aa MW: 21813.4 Da PI: 10.2172

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g19970	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.8	3.3e-26	74	123	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++l+++++yF+lpi++AAk+L v+lTvLK++CR+++++RWPhRkiksl CA03g19970 74 DMLELDEIQRYFHLPITEAAKKLRVGLTVLKKRCRELNVMRWPHRKIKSL 123 56899*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.507	57	145	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-23	76	123	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MCEDVDLKLL QSPTHVDNNN IPIDVNAKVM PLNVTHDTLG EYQVTNRSFY ELNGGPKEFI 60 RKQSNRTGRH KKSDMLELDE IQRYFHLPIT EAAKKLRVGL TVLKKRCREL NVMRWPHRKI 120 KSLQTLIRSV KEMGLTSEVE MLEEHQRMVE QVPEMELTER TKKLRQACFK ANYKKRRASM 180 MPAFF*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975442	7e-49	HG975442.1 Solanum pennellii chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016566893.1	1e-133	PREDICTED: protein RKD4
Swissprot	Q9LVU8	3e-41	RKD4_ARATH; Protein RKD4
TrEMBL	A0A2G2ZZY3	1e-134	A0A2G2ZZY3_CAPAN; Protein RKD2
STRING	PGSC0003DMT400047681	1e-88	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12143	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-43	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]