PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g20260
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 262aa    MW: 29304 Da    PI: 6.788
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g20260genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.41.4e-23169227259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+++WrKYG K   gs+f +sYYrC +  +Cp++++v++s++d + v++tY+g+H h+
  CA03g20260 169 ADQWRWRKYGMKRTGGSPFLKSYYRCNQGeDCPARRHVQQSSTDSNKVIVTYRGQHSHP 227
                 59*************************988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-24158229IPR003657WRKY domain
PROSITE profilePS5081125.006163229IPR003657WRKY domain
SuperFamilySSF1182905.36E-21167229IPR003657WRKY domain
SMARTSM007744.4E-24168228IPR003657WRKY domain
PfamPF031063.2E-20170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAENQNDWDL WAIVRSCCNM NNSVHDDVIS FDNVNSTSVL VDHGVHEDPT HGNSANNART  60
STSFQEQSGC AGDFSDSFAT ENKHYFGLDE VLGLSKNVNT NSRIEPHNPE NQTESITDTP  120
LVEHEKKKNK NKKTRYSLSS SSIEAGKAFP YCRKSTERYE VLAEKLSEAD QWRWRKYGMK  180
RTGGSPFLKS YYRCNQGEDC PARRHVQQSS TDSNKVIVTY RGQHSHPPPN QHIATVQGNH  240
NAAAPVEDPP FPSSPSTLLF N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-141702291674WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566888.10.0PREDICTED: probable WRKY transcription factor 27
TrEMBLA0A1U8GDU30.0A0A1U8GDU3_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A0090.0A0A2G3A009_CAPAN; probable WRKY transcription factor 27
STRINGPGSC0003DMT4000952711e-138(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-18WRKY DNA-binding protein 27