PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g21660

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HSF

Protein Properties

Length: 506aa MW: 56063.9 Da PI: 4.9703

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g21660	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.2	7.3e-35	21	113	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y+i++d++++++isws+++nsfvv++ efa+++LpkyF+h+nf+ FvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i CA03g21660 21 FLLKTYDIVDDPSTDSVISWSRSNNSFVVWNVPEFARDILPKYFRHNNFSNFVRQLNTYGFRKVDPDR---------WEFANEGFLRGHKHLLKSIS 108 9******************999*************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k + CA03g21660 109 RRKAS 113 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.0E-37	11	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	5.71E-34	17	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	6.0E-58	17	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.4E-30	21	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.4E-19	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.4E-19	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.4E-19	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009408	Biological Process	response to heat
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MNGVHEAAAA AMGGKSPPPP FLLKTYDIVD DPSTDSVISW SRSNNSFVVW NVPEFARDIL 60 PKYFRHNNFS NFVRQLNTYG FRKVDPDRWE FANEGFLRGH KHLLKSISRR KASQVQGHQQ 120 TTSQVPNASV ASCVEVGKFG IDEEVERLKR DKDVLMQELV KLRQQQQETD HQLQTVGQRV 180 QLMENRQQQM MSFLAKAMQS PGFVAQLVHQ QNGNNRRITG LNKKRRLPEQ DDENVECKPN 240 NVLPDGQVVR YQPSMNEAAK ALMQQILKIN APGRLDNRFK NSNGFLTNNP LPPKNPLDSC 300 GTSSCISGVT LSEVLPTSSQ SHLMSDSGFP FNSCSSAMSV TQSSITVVPG EAKVPALPES 360 DALNSQAVHD LPEFYQGQRI NRLDTLGIAD FKMSETGNEP DIDTTQGILD GLTTVVPDGF 420 LADTDGDVLQ DEIPKLPAIN DIFWDHILSA SPLPGDTDEI GSLAVEDGLD KEEDFLGVQE 480 SDWDKLKHMH NLTEQMGLLS SVAQI*

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MNGVHEAAAA AMGGKSPPPP FLLKTYDIVD DPSTDSVISW SRSNNSFVVW NVPEFARDIL  60
PKYFRHNNFS NFVRQLNTYG FRKVDPDRWE FANEGFLRGH KHLLKSISRR KASQVQGHQQ  120
TTSQVPNASV ASCVEVGKFG IDEEVERLKR DKDVLMQELV KLRQQQQETD HQLQTVGQRV  180
QLMENRQQQM MSFLAKAMQS PGFVAQLVHQ QNGNNRRITG LNKKRRLPEQ DDENVECKPN  240
NVLPDGQVVR YQPSMNEAAK ALMQQILKIN APGRLDNRFK NSNGFLTNNP LPPKNPLDSC  300
GTSSCISGVT LSEVLPTSSQ SHLMSDSGFP FNSCSSAMSV TQSSITVVPG EAKVPALPES  360
DALNSQAVHD LPEFYQGQRI NRLDTLGIAD FKMSETGNEP DIDTTQGILD GLTTVVPDGF  420
LADTDGDVLQ DEIPKLPAIN DIFWDHILSA SPLPGDTDEI GSLAVEDGLD KEEDFLGVQE  480
SDWDKLKHMH NLTEQMGLLS SVAQI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-26	3	113	2	123	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00514	DAP	Transfer from AT5G16820	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016564127.1	0.0	PREDICTED: heat stress transcription factor A-1 isoform X2
Swissprot	Q84T61	1e-151	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1U8FY74	0.0	A0A1U8FY74_CAPAN; Heat stress transcription factor A-1
TrEMBL	A0A2G3A0E1	0.0	A0A2G3A0E1_CAPAN; heat stress transcription factor A-1 isoform X2
STRING	XP_009623591.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16820.2	1e-123	heat shock factor 3

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]