PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g21780
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 280aa    MW: 31061.4 Da    PI: 7.4204
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g21780genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-0793117126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt+lC+ f++ G C+  ++C+FaHg
  CA03g21780  93 FKTKLCCKFRA-GVCPNISNCNFAHG 117
                 69*********.*************8 PP
2zf-CCCH43.45.8e-14228253126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  CA03g21780 228 WKTRICNKWETTGYCPFGSKCHFAHG 253
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.5E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-790123IPR000571Zinc finger, CCCH-type
SMARTSM003560.03992118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.57792119IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-593117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-8167196IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-7167196IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.685168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.23168195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-10224256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-16224254IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422227255IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8227254IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-11228253IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDFIGEVSFA GGSDVIGVEN WGHGFTDQEV WATEDDYRAW NSGRSSETPS NSSQDGRHSQ  60
NRCGNEPPHK KSRNSSGEDS VNNRARAIGK MFFKTKLCCK FRAGVCPNIS NCNFAHGIEE  120
LRKPPPNWQD IVVAHESERG GGMMLEPREE HQIPTASSPD PRSESQRSYK GRHCKKFYTE  180
EGCPYGDTCT YLHDEQSRDR ESVAISVTPT VGGFGNNAAG ANLKPSNWKT RICNKWETTG  240
YCPFGSKCHF AHGAAGMNVV FAYLFGYRRC DFTAYICLV*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564112.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LQM33e-87C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A2G3A0H40.0A0A2G3A0H4_CAPAN; Zinc finger CCCH domain-containing protein 12
STRINGPGSC0003DMT4000680591e-164(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.14e-90C3H family protein