PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g22700
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 341aa    MW: 37837.1 Da    PI: 6.5138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g22700genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09174221455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  CA03g22700 174 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIINYVQSLQ 221
                 8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.80E-11168225No hitNo description
SuperFamilySSF474591.44E-17168238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-17170237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.732170220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6174221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10176226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSTFSSYQLQ QHNTPSLLDS VFLPSSPLKM SGFFEEPNNS CVVQNCFSQF YQPEFPTNNV  60
NVNENSYCLD QNTNVTNKSS SSISLDMDSS SVTDKMESGN NKPNVTSPMD KKRKSREGSS  120
SMTSANSKNV TQGDNGKKNK SNSKLVAKDE KKANEEAPTG YIHVRARRGQ ATDSHSLAER  180
VRREKISERM KMLQSLVPGC DKVTGKALML DEIINYVQSL QNQVEFLSMK LASLNPMYYD  240
FGMDLDALMV RPDDQNLSGL ETQLPNIQQA STTTSQAAEV IPNTNSGYPF LDNSASLMFQ  300
QAHFPNSIHQ GIGQLLWGAE DQRQKIINQS GFSNNFCSFH *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0462750.0EU046275.1 Capsicum annuum bHLH transcription factor Upa20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311839.10.0transcription factor bHLH137-like
TrEMBLA8TLW50.0A8TLW5_CAPAN; BHLH transcription factor Upa20
STRINGPGSC0003DMT4000511370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.22e-61bHLH family protein
Publications ? help Back to Top
  1. Kay S,Hahn S,Marois E,Hause G,Bonas U
    A bacterial effector acts as a plant transcription factor and induces a cell size regulator.
    Science, 2007. 318(5850): p. 648-51
    [PMID:17962565]