PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g22950
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ZF-HD
Protein Properties Length: 183aa    MW: 20433.7 Da    PI: 8.6939
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g22950genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.21.6e-27863457
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee..gtaaalkCaACgCHRnFHRrev 57
                   Y+eCl+NhAaslG++a+DGCgEf+ +++++  g + +l+CaACgCHRnFHR+ +
   CA03g22950  8 DIYRECLRNHAASLGSYATDGCGEFTLDDHNTspGGSFSLNCAACGCHRNFHRKIT 63
                 57************************986655467799***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.1E-23962IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-171061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.6E-231061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.1481062IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-2794165IPR009057Homeodomain-like
SuperFamilySSF466892.28E-1696163IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-26105163IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MQGDKSNDIY RECLRNHAAS LGSYATDGCG EFTLDDHNTS PGGSFSLNCA ACGCHRNFHR  60
KITCGGASYS NNXXXXXXXX XXXXXXXXXX XXTQESPAVS ERSGKKRFRT KFTTDQKEKM  120
LAFAEKLGWT LQRKDEENET ERFCKEVGVS RKVFKVWMHN HKNNSSSVSS NITANNASSL  180
TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-211061671878ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754428e-98HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567717.11e-107PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBLA0A2G3A0P81e-114A0A2G3A0P8_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000839931e-103(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.19e-38homeobox protein 22