PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g23190
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17899.4 Da    PI: 5.8798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g23190genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.91.9e-212271150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                ++i+nk   qv fskRr g++KKA+ELS+ C+++vavi+ s+ gkly + 
  CA03g23190 22 EKISNKKSLQVAFSKRRGGLFKKASELSTSCGVQVAVIVESPAGKLYSFG 71
                579********************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.7171474IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-281473IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-261586IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-161636IPR002100Transcription factor, MADS-box
PfamPF003198.5E-242370IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-163651IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-165172IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MENKEEETSK KKTLGRRKIP IEKISNKKSL QVAFSKRRGG LFKKASELST SCGVQVAVIV  60
ESPAGKLYSF GSPSVDSVID RFERTRLCFN NCSEVHEEEK GVMEKSNWWW EDVCPENLGL  120
EELEERMSDM QVLKNNLLKR IQDHDDLVMA DSFLNL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563959.11e-111PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U8G7G41e-110A0A1U8G7G4_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A0S11e-110A0A2G3A0S1_CAPAN; agamous-like MADS-box protein AGL62
STRINGPGSC0003DMT4000900249e-51(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-25AGAMOUS-like 62