PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g23930
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 331aa    MW: 38832.2 Da    PI: 6.847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g23930genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07127166345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +WT+eE e+  +  k++G++ Wk  a ++g  + + ++k+ w+
       CA03g23930 127 KWTEEEYEIVRKFQKEHGNN-WKVLADELG--KHRFHVKDTWR 166
                      8*****************99.********9..56777887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.1151122IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-454141IPR009057Homeodomain-like
PROSITE profilePS512949.192121173IPR017930Myb domain
SMARTSM007170.0081124171IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-9125182IPR009057Homeodomain-like
CDDcd001670.00557127156No hitNo description
PfamPF139216.2E-11128186No hitNo description
Gene3DG3DSA:1.10.10.602.4E-9142177IPR009057Homeodomain-like
PROSITE profilePS500908.629170238IPR017877Myb-like domain
SMARTSM007170.88174240IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-9178239IPR009057Homeodomain-like
SuperFamilySSF466896.24E-5218293IPR009057Homeodomain-like
PROSITE profilePS500907.34240293IPR017877Myb-like domain
SMARTSM0071722244295IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MVYIVLAWVV RATWHLFLVG DGNPVYLVEI FPSSDDPSDE KHEIEDENLL RGKRFSKLED  60
EIVKEAVHKY VDFHNLGEEG LKKILNSRSY PEIKGCWKEI GSAIPYRPYT AVYYRAQILF  120
RRSESRKWTE EEYEIVRKFQ KEHGNNWKVL ADELGKHRFH VKDTWRRIKR PNQNKGQWTQ  180
EEYQSLFDLV NTDLRLRLSE EKRSKYGMLR DNIAWTAISD KLSTRTEANC CLKWYDQLTS  240
PMVAKGEWAD VDDYRLVDAL FELDASCIED VDWDNLLDHR PGEICRKRWN QMVLHIGILE  300
YHGVTKTCVA KSLGTLYTRS STGCVTVVML *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563897.10.0PREDICTED: RNA polymerase I termination factor-like
RefseqXP_016563898.10.0PREDICTED: RNA polymerase I termination factor-like
TrEMBLA0A2G3A0W80.0A0A2G3A0W8_CAPAN; Uncharacterized protein
STRINGXP_009605412.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-116MYB_related family protein