PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g24730
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 112aa    MW: 12525.2 Da    PI: 6.9277
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g24730genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.34.2e-1627903299
                --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                ++++  led+sg +W++++  +++ g+  +++GW+eF +++gL++gD++ F+++ ++ f  +v +f +
  CA03g24730 27 TDQETYLEDSSGLRWKMTV--CNHNGSLAIRQGWSEFSSEHGLNVGDVLFFRYVPSDHF--LVEIFGT 90
                45689**************..*******************************9976777..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.998191IPR003340B3 DNA binding domain
SMARTSM010191.1E-6391IPR003340B3 DNA binding domain
SuperFamilySSF1019361.41E-181293IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-131688IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-182695IPR015300DNA-binding pseudobarrel domain
CDDcd100172.15E-112888No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MYFLILFFAI SFQFFPPSVA GSISHLTDQE TYLEDSSGLR WKMTVCNHNG SLAIRQGWSE  60
FSSEHGLNVG DVLFFRYVPS DHFLVEIFGT SGCEKITFGC DIGKGKKRAR T*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564642.12e-45PREDICTED: uncharacterized protein LOC107863290 isoform X3
TrEMBLA0A2G2V3S48e-46A0A2G2V3S4_CAPBA; Uncharacterized protein
STRINGPGSC0003DMT4000392492e-43(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-07B3 family protein