PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g24740
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 234aa    MW: 25773.1 Da    PI: 8.4746
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g24740genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.22.6e-1714921699
                EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                 ++p +fa++ ++   ++++  led++gr+W+ ++  +k++gr  +++GW eF +++gLk g fvvF+++  s++ + v++f +
  CA03g24740 14 QYIPSTFARSVSHL--TDQETYLEDSKGRRWRARV--CKHDGRLAIKQGWPEFSSEHGLKLGNFVVFRYVP-SSQPFIVQIFGT 92
                58*******99765..4568***************..*******************************996.455559999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.93193IPR003340B3 DNA binding domain
CDDcd100175.46E-15290No hitNo description
SMARTSM010192.7E-10393IPR003340B3 DNA binding domain
SuperFamilySSF1019365.3E-19895IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-181095IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-151391IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSYFLVLISE TSFQYIPSTF ARSVSHLTDQ ETYLEDSKGR RWRARVCKHD GRLAIKQGWP  60
EFSSEHGLKL GNFVVFRYVP SSQPFIVQIF GTSGCEKIRF CSDKGEKVAR AYLEATPPLL  120
QTTSGKAESE KATDIDAGTG KGKAAICVDE SFGMIDRDAQ NDQEDGRLCL DLTSFELPAS  180
KPLAQGTSSC DNGKGKRRAS TSPEEIRTSP LGPKDKKFKE ASQFGRFSIT TKC*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567678.11e-154PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLA0A1U8GG281e-153A0A1U8GG28_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A1621e-153A0A2G3A162_CAPAN; B3 domain-containing protein Os11g0197600-like isoform X2
STRINGXP_009775871.18e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34400.16e-08B3 family protein