PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g25040
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family B3
Protein Properties Length: 91aa    MW: 10474 Da    PI: 9.0827
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g25040genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.5e-1415761782
                E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
          B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82
                ++p +fa + ++   ++++  led+sg++W+v++  +k++gr  +++GW eF  ++gL  g f+v+
  CA03g25040 15 YIPSTFAWSVSHL--TDQETYLEDSSGQRWRVRV--CKHDGRLAIKQGWPEFSAEHGLTLGNFLVL 76
                89*****999755..4568***************..**************************9884 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.041190IPR003340B3 DNA binding domain
CDDcd100172.05E-9279No hitNo description
SuperFamilySSF1019361.2E-141077IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.9E-141276IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-111581IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MSYFLVLISD ASFQYIPSTF AWSVSHLTDQ ETYLEDSSGQ RWRVRVCKHD GRLAIKQGWP  60
EFSAEHGLTL GNFLVLFKYL FKHGPKTLFK *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567678.11e-35PREDICTED: B3 domain-containing protein Os11g0197600-like isoform X2
TrEMBLA0A2G2ZVZ16e-61A0A2G2ZVZ1_CAPAN; Uncharacterized protein
STRINGXP_009616981.12e-29(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22102352