PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g25370

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 404aa MW: 46130.3 Da PI: 6.2451

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g25370	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.6	8.3e-24	88	185	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+++v++Li+a+++++e+ +++ kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d l CA03g25370 88 KWTDEMVRLLITAVSYIGEETAAAEygggrrkcsnnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPALLDML 185 7*****************99987777888889999********************************************569999888887765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.7E-23	86	212	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MSCYGGFDFQ GSTRANQQQV QHYQSNSKQG SMAINANFPL TIGGSNQNIS LADYNSKGER 60 GKSASDDDEP SFIEDGGKKG ATPWQRVKWT DEMVRLLITA VSYIGEETAA AEYGGGRRKC 120 SNNLHKKGKW KSVSKVMAER GHFVSPQQCE DKFNDLNKRY KRLNEILGRG TSCEVVENPA 180 LLDMLGHVSD KGKEEVRKIL SSKHLHYEEM CSYHNGNRLH LPPDPELKHS LHLALKSRDE 240 YDDNDARKKH PQDDNDEDDH EAADLEDRGD EYEENHRLHG GTSGGFSKRI KQCQGHETVT 300 SLTTLDCNRS LIPQPQTDVS QVFPEGDKAK QWLDQCTLQL EDQKLQLQAQ MLELEKERFN 360 WQRFSRKKDI ELEVMRMENE RLKLENERIA LELKRKEMFA DNA*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MSCYGGFDFQ GSTRANQQQV QHYQSNSKQG SMAINANFPL TIGGSNQNIS LADYNSKGER  60
GKSASDDDEP SFIEDGGKKG ATPWQRVKWT DEMVRLLITA VSYIGEETAA AEYGGGRRKC  120
SNNLHKKGKW KSVSKVMAER GHFVSPQQCE DKFNDLNKRY KRLNEILGRG TSCEVVENPA  180
LLDMLGHVSD KGKEEVRKIL SSKHLHYEEM CSYHNGNRLH LPPDPELKHS LHLALKSRDE  240
YDDNDARKKH PQDDNDEDDH EAADLEDRGD EYEENHRLHG GTSGGFSKRI KQCQGHETVT  300
SLTTLDCNRS LIPQPQTDVS QVFPEGDKAK QWLDQCTLQL EDQKLQLQAQ MLELEKERFN  360
WQRFSRKKDI ELEVMRMENE RLKLENERIA LELKRKEMFA DNA*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563744.1	0.0	PREDICTED: uncharacterized protein LOC107862628
TrEMBL	A0A1U8G6U9	0.0	A0A1U8G6U9_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2ZW26	0.0	A0A2G2ZW26_CAPAN; uncharacterized protein LOC107862628
STRING	XP_009590352.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-136	sequence-specific DNA binding transcription factors