PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g26510
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family TALE
Protein Properties Length: 109aa    MW: 13047 Da    PI: 10.4738
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g26510genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.61e-0853872155
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55
                + +yp++ ++  LA+++gL+ +q+ +WF N+R ++
  CA03g26510 53 NWPYPTEVDKVFLAESTGLDPKQINNWFINQRKRH 87
                569*****************************985 PP
2ELK24.75.5e-09728122
         ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                E+K+ L+ KYsgy+ sLk+ F+
  CA03g26510  7 EIKDKLMGKYSGYITSLKHNFC 28
                89****************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512138.748727IPR005539ELK domain
PfamPF037891.9E-7728IPR005539ELK domain
SMARTSM011882.4E-4728IPR005539ELK domain
PROSITE profilePS5007111.112790IPR001356Homeobox domain
SMARTSM003894.1E-112994IPR001356Homeobox domain
SuperFamilySSF466892.57E-1929100IPR009057Homeodomain-like
CDDcd000861.67E-103091No hitNo description
Gene3DG3DSA:1.10.10.604.5E-273392IPR009057Homeodomain-like
PfamPF059204.7E-174786IPR008422Homeobox KN domain
PROSITE patternPS0002706588IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MCRRRSEIKD KLMGKYSGYI TSLKHNFCKK NNKGKLPREA TKILFNWWNT HYNWPYPTEV  60
DKVFLAESTG LDPKQINNWF INQRKRHWKP SENMQFAVME TIHGHFSQ*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0257134e-92AB025713.1 Nicotiana tabacum mRNA for homeobox 9, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244737.15e-60PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ84JS65e-41KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2G2XZ366e-77A0A2G2XZ36_CAPAN; Uncharacterized protein
STRINGXP_009618137.11e-58(Nicotiana tomentosiformis)
STRINGPGSC0003DMT4000874409e-59(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-43KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]