PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g26850
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 92aa    MW: 10260.4 Da    PI: 5.064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g26850genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.52.1e-0715561454
                HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                d+iN+   +L++llP+ +s+ +s+  s + iLe++++YI++L
  CA03g26850 15 DEINDLVLKLQSLLPNsSSRCTSRASSSSKILEETCNYIRKL 56
                79**************666888888***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.036156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-81172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-81470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-41556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRRSNNS RFTQDEINDL VLKLQSLLPN SSSRCTSRAS SSSKILEETC NYIRKLHSEV  60
DDLSEKLSQV LDSADTNTVD LVDTLLTLLQ Q*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754425e-39HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567634.15e-57PREDICTED: transcription factor PRE3
SwissprotQ9LJX13e-20PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8GHR81e-55A0A1U8GHR8_CAPAN; Transcription factor ILI5
TrEMBLA0A2G2X8K31e-55A0A2G2X8K3_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A1E91e-55A0A2G3A1E9_CAPAN; transcription factor PRE3
TrEMBLA0A2G3CYH01e-55A0A2G3CYH0_CAPCH; Transcription factor PRE5
STRINGXP_009773320.13e-35(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74500.13e-17activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1