PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g27490

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 282aa MW: 30644.3 Da PI: 9.8777

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g27490	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.8	5.2e-13	100	144	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky CA03g27490 100 PWTEVEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 144 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.543	93	149	IPR017930	Myb domain
SuperFamily	SSF46689	1.01E-15	95	149	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-16	96	147	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-9	97	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-10	99	144	IPR009057	Homeodomain-like
CDD	cd00167	1.84E-8	100	145	No hit	No description
Pfam	PF00249	3.4E-10	100	144	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MTITYGHSSF ISAGELPPAD VSGGEIMLFG VRVKVDPMRK SVSLNNLSQY EQPNSNDNNN 60 SNGGNTNDSS SKVADEGYAS ADDAVPHHSG SGRERKRGVP WTEVEHKLFL LGLQKVGKGD 120 WRGISRNFVK TRTPTQVASH AQKYFLRRTN LNRRRRRSSL FDITTDSVSV LPTEEAKNLQ 180 EAHVETSKIN AFQVTSVPIK FAPLVLPAQM DKPIESPIQS YNASSIYLRP VPVVVPVSNQ 240 SSAIESSSLS LTLSLSSPSS SSTRYQVMST FSNGESIISV A*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU560899	0.0	EU560899.1 Capsicum annuum clone DEG202 MYB transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001311764.1	0.0	transcription factor MYB1R1
Swissprot	Q2V9B0	3e-87	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A1U8G694	0.0	A0A1U8G694_CAPAN; Transcription factor MYB1R1
TrEMBL	A0A2G2Y6W9	0.0	A0A2G2Y6W9_CAPAN; transcription factor MYB1R1
STRING	PGSC0003DMT400063172	1e-109	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2574	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74840.2	7e-55	MYB_related family protein

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]