PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g27670
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 271aa    MW: 29671.9 Da    PI: 9.0434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g27670genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.39e-11153200455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  CA03g27670 153 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 200
                 8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-18147219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-9147204No hitNo description
Gene3DG3DSA:4.10.280.103.8E-18149218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828149199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8153200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MNHHSRRRIL LHTVWLRFGR FLXAANGDIG GGGLGLRMSS FTGLLEAAAN SINESTVTEQ  60
SGRSGGDGGV RKRDVNSEDD FSKFVSTSDA NELDGSVAKR LKASQSKEEN GASKVELESS  120
SQTANKGTEQ SSKPEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK ILQDLVPGCN  180
KVIGKALVLD EIINYIQSLQ RQVEFLSMKL EAVNSRMNHP IETFPSKDLA PSTFDATGMI  240
FGTQAPREYA QGAQSEWLHM QVGSSFDRAT *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563548.10.0PREDICTED: transcription factor bHLH79
SwissprotQ69WS34e-78BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A2G3A1L30.0A0A2G3A1L3_CAPAN; Transcription factor bHLH79
STRINGPGSC0003DMT4000628441e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-74BIG PETAL P