PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g27690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 356aa    MW: 39750.2 Da    PI: 6.9769
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g27690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.4e-1270111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T++E+el++++++  G++ W+ Ia+ +  gRt++++k+ w++
       CA03g27690  70 SFTPQEEELIIKLHATIGSR-WSIIAQQLA-GRTDNDVKNLWNT 111
                      79******************.*********.**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.3421062IPR017877Myb-like domain
SMARTSM00717561464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-103069IPR009057Homeodomain-like
SuperFamilySSF466891.7E-1748121IPR009057Homeodomain-like
PROSITE profilePS5129420.25563117IPR017930Myb domain
SMARTSM007171.0E-1067115IPR001005SANT/Myb domain
CDDcd001674.46E-870113No hitNo description
Gene3DG3DSA:1.10.10.602.2E-2170117IPR009057Homeodomain-like
PfamPF002493.4E-1170111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRPPCCNDK VHNRKCNWIE DDSNTSTYVS TKHGIGNWAT MSKKSGYGRC GRIQKQRWSN  60
RLKPDLKQDS FTPQEEELII KLHATIGSRW SIIAQQLAGR TDNDVKNLWN TKLKKKLSAM  120
GIDPVTHKPF SQILTDYGNI GGFPKARTRF VSLNRELKGA FMSRPEQLQH SLQSFQNFHS  180
LCVKLPKTEA SEECFFSNNR DSSNVNQPPV DLLSELQAIK YVTEASNYNS PKAIFSHHPN  240
QMTDCSTSSP LSSSSSSSAS HSLNENQVNW CDYLLDDAFI PSNFKDQEDA LTIEEKLVSS  300
GAQDGSNNVP STRDFQASLS TKGTSSSSSS FVEAMLECEN EMFLNFPGLS EDPFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-19151177108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016567631.10.0PREDICTED: transcription factor MYB35
TrEMBLA0A1U8G8H50.0A0A1U8G8H5_CAPAN; Uncharacterized protein
TrEMBLA0A2G3A1N20.0A0A2G3A1N2_CAPAN; transcription factor MYB35
STRINGSolyc03g113530.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA123481922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.18e-46MYB family protein