PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g28530
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NF-YB
Protein Properties Length: 160aa    MW: 17950.4 Da    PI: 4.382
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g28530genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB73.14.5e-231193385
       NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                ++d+ lP a +++i+k++lP + ++++d+++++ ec +efi +++se+++ c+re+++ti+++ +l +l  lGf +y+e++ +
  CA03g28530 11 KEDASLPKASMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREDKRTIAPEHVLKSLEVLGFGEYIEEVYA 93
                6899***************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.2E-368139IPR009072Histone-fold
SuperFamilySSF471132.75E-3212140IPR009072Histone-fold
PfamPF008081.8E-191478IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MESMDIVGKT KEDASLPKAS MTKIIKEMLP PDVRVARDTQ DLLIECCVEF INLISSESNE  60
VCNREDKRTI APEHVLKSLE VLGFGEYIEE VYAAYEQHKL ETVDTVRAGK WSNNVAEMTE  120
EEALAAQQRM FAEARARMNG VVTVPPKQQE TEAEQKLDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-341213512133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755152e-61HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563434.11e-115PREDICTED: protein Dr1 homolog
SwissprotP495921e-85NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A1U8G5Z11e-114A0A1U8G5Z1_CAPAN; Protein Dr1-like protein
TrEMBLA0A2G2WRA01e-114A0A2G2WRA0_CAPBA; Protein Dr1-like protein
TrEMBLA0A2G3A1T91e-114A0A2G3A1T9_CAPAN; protein Dr1 homolog
TrEMBLA0A2G3CYU21e-114A0A2G3CYU2_CAPCH; Protein Dr1-like protein
STRINGPGSC0003DMT4000632561e-109(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38202244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.46e-90nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]