PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g28940
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 542aa    MW: 58913.1 Da    PI: 7.9721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g28940genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-12245293255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++ + Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  CA03g28940 245 RSKHSATEQRRRSKINDR-HMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 293
                 889***************.89*******9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.4E-19240309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14241310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.976243292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9245293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.36E-11245297No hitNo description
SMARTSM003531.8E-8249298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MYLISPFSMS VVHANKEGGY LKTHDFLQPL EQAEMTSRKE DTKVEVVAVE RPSPPLAATP  60
SGEHTLPGGI GTFSISYLHQ RVPKPEASLF SVAQASSTDR NDENSNCSSY TGSGFTLWDE  120
SAVNKGKTGK ENSGGDRHIL REAGVNTGGV HPTTSLEWQS QSSSNHKHNT AALSSLSSAQ  180
QSSPLKSQNF LHMITSAKNA QDDDDDEDED CVIKKEPQSH PRGLSCNLSV KVDGKGNDQK  240
PNTPRSKHSA TEQRRRSKIN DRHMLRGIIP NSDQKRDKAS FLLEVIEYIH FLQGKVHKYE  300
ESYQGWDNEP LKLPLSKCHR TTHGVSNHPQ CTINASGAAV PYARKFDESV MAISSANPIN  360
VQKLEPNIST TSLKENGQQP GLTNKATALP MHPNTFSFCG TNSTAALHSS KLMADTDKLE  420
SKSHSEFSLS RSHMTDYAIP NTNPKGQALS IESGTISISS AYSQGLLNTL TQALQNSGVD  480
LSQANISVQI DLGKRANGRV NSSASTIKGD DVSTSNQPTP QSRVTTTREE SDQAFKRRKT  540
S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016563392.10.0PREDICTED: transcription factor BIM1 isoform X1
TrEMBLA0A2G3A1U90.0A0A2G3A1U9_CAPAN; Transcription factor BIM3
STRINGSolyc03g114720.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39692345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-83bHLH family protein