PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g29080
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 231aa    MW: 26166.5 Da    PI: 5.8376
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g29080genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.4e-052348123
                EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
                + Cp   Cgk++ + + Lk+Hi++ H
  CA03g29080 23 HICPypACGKRYAHEYKLKNHISStH 48
                6799999***************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.79E-9353No hitNo description
Gene3DG3DSA:3.30.160.602.8E-10949IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3672353IPR007087Zinc finger, C2H2
PROSITE patternPS0002802548IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-67997IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQAFSLDFNL RSHMKTHSQE NYHICPYPAC GKRYAHEYKL KNHISSTHQK NTPVAQKYTP  60
PVEKPVKTPK STPATYGSSS SERPYSCPYE GCDKSYIHEY KPNLLLRNMH PGHLPDDNAK  120
NAQSAADNEM GEGSDQDTYA ARRGNGRIQK QSRPKPSLKQ PPLKVARKGS SSAASQANLS  180
ISKKPWLLKE ENYNEEDSEE TEEERERDDV GEGWRYGEND DDDEETEEDD *
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176940.0AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564400.11e-133PREDICTED: uncharacterized zinc finger protein At4g06634
SwissprotQ2V3L32e-69YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2G3A1W31e-169A0A2G3A1W3_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000234591e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.32e-62C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]