PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g29490

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 521aa MW: 58361.4 Da PI: 4.3727

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g29490	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.3e-08	263	310	3	47
SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +W++eE+el+ ++v + W+ a +++ R++++++s+++++ CA03g29490 263 KWSEEEEELFHEVVLSNPASlgknFWNHLAIEFP-SRSREELVSYYFNV 310 8***********6654445555******.*********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-4	258	321	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-4	260	313	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-6	263	310	IPR001005	SANT/Myb domain
CDD	cd00167	0.00178	263	311	No hit	No description
PROSITE profile	PS50090	6.098	263	311	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MLVVAAIMVQ KRPFGEEDLY EVSSKQPRCE PSCQLGSVLE HSSLEAYASG GDEENSSRTI 60 PDANKKPDSH NVAEVLFSSD KETEMSIHGS ASNSSWPTSS TSEEDIMPEV PFHILTSPEY 120 YYFDHPFRAS AHHREIHSPL LSNPQKMVPI GPDFQAELPE WDACNKDNPC IDGIHETLSP 180 SSQADENKFA GRTIVLMPKM ELLADNIENI AERGVECSCE DIGSIRCVRL HNIEAREKLK 240 LALGEETFVR LGFCDMGEVV AEKWSEEEEE LFHEVVLSNP ASLGKNFWNH LAIEFPSRSR 300 EELVSYYFNV FILRKRAEQN RFDPLNIDSD NDEWHETVDD ADEGAKMTDE DEDSVVESPA 360 YYNYLSYNMG HEEHDRPAWE YYNSVNFGSR KVFTDVQESC LGKLFDSNSS CKLSMQPQDQ 420 GLPNKVVEQE VQGGSCITGA AGVTSESSLG KTNNNKHWAS DIAGTGIGTN HDSLLEPSNR 480 KEWDVGYLSC ARNKVDLLPT HTMIEEVFGD GAWIHKSRDV *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MLVVAAIMVQ KRPFGEEDLY EVSSKQPRCE PSCQLGSVLE HSSLEAYASG GDEENSSRTI  60
PDANKKPDSH NVAEVLFSSD KETEMSIHGS ASNSSWPTSS TSEEDIMPEV PFHILTSPEY  120
YYFDHPFRAS AHHREIHSPL LSNPQKMVPI GPDFQAELPE WDACNKDNPC IDGIHETLSP  180
SSQADENKFA GRTIVLMPKM ELLADNIENI AERGVECSCE DIGSIRCVRL HNIEAREKLK  240
LALGEETFVR LGFCDMGEVV AEKWSEEEEE LFHEVVLSNP ASLGKNFWNH LAIEFPSRSR  300
EELVSYYFNV FILRKRAEQN RFDPLNIDSD NDEWHETVDD ADEGAKMTDE DEDSVVESPA  360
YYNYLSYNMG HEEHDRPAWE YYNSVNFGSR KVFTDVQESC LGKLFDSNSS CKLSMQPQDQ  420
GLPNKVVEQE VQGGSCITGA AGVTSESSLG KTNNNKHWAS DIAGTGIGTN HDSLLEPSNR  480
KEWDVGYLSC ARNKVDLLPT HTMIEEVFGD GAWIHKSRDV *

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238568	0.0	AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence.
GenBank	HG975515	0.0	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016563302.1	0.0	PREDICTED: uncharacterized protein LOC107862293
Refseq	XP_016563303.1	0.0	PREDICTED: uncharacterized protein LOC107862293
TrEMBL	A0A1U8FVW0	0.0	A0A1U8FVW0_CAPAN; Uncharacterized protein
TrEMBL	A0A2G3A1Z5	0.0	A0A2G3A1Z5_CAPAN; uncharacterized protein LOC107862293
STRING	PGSC0003DMT400063110	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1514	16	25