PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g30030

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Nin-like

Protein Properties

Length: 193aa MW: 22289.6 Da PI: 7.858

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g30030	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.7	7.2e-26	27	75	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++skyF++pi++AAkeL+++lT+LK++CR +GI+RWPhRk+ sl CA03g30030 27 MLSRDKISKYFYMPITQAAKELNIGLTLLKKRCRDLGIRRWPHRKLMSL 75 58899*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.416	10	96	IPR003035	RWP-RK domain
Pfam	PF02042	4.2E-21	28	75	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MGNDRVEENI VTEKEKQSDQ EISSSRMLSR DKISKYFYMP ITQAAKELNI GLTLLKKRCR 60 DLGIRRWPHR KLMSLQTLIK NVKELEKGGG KGMEQKLKDV IKLLEEEKKK MEEVPDMELE 120 EKTKRLRQAC FKANYKRRRM MCMPELQASF GSYCTADPNA VNGGDEEEDD EEIKSLLADC 180 FSNNNSPSLH EH*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027771446.1	1e-104	protein RKD2-like
Swissprot	Q9M9U9	3e-52	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2G3A291	1e-137	A0A2G3A291_CAPAN; Protein RKD3
STRING	Solyc03g116010.1.1	4e-94	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-37	RWP-RK domain-containing protein