PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA03g31290

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 349aa MW: 39520.1 Da PI: 4.9379

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA03g31290	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.6	7.8e-24	35	125	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 rWt+qe+l+Li++++ eer rg+ + +p+W++vs+++r++g r+p+qC+++w+n+ ++kkik++e++ + s+s + CA03g31290 35 RWTRQETLVLIQGKKVAEERAHRGRrstsifgsdKPEPKWDSVSSYCRQHGADRGPVQCRKRWSNMISDFKKIKTWESQANGSSESYWIIS 125 8************999999998666677777799****************************************9866666666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.155	28	101	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-5	34	102	IPR009057	Homeodomain-like
Pfam	PF13837	8.1E-13	34	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MTSGSAEMNG NTTPLANRHQ KPTEDGKSKT PRHSRWTRQE TLVLIQGKKV AEERAHRGRR 60 STSIFGSDKP EPKWDSVSSY CRQHGADRGP VQCRKRWSNM ISDFKKIKTW ESQANGSSES 120 YWIISNDLRR EKRLPGSFDR EVYNVLDGKD VSAEACQLAL VTITTDDKFG YGMETVEEEE 180 EEEEEEXXXX XXXXXXEEEE EEEDNDDVSH TGEYTMEDDV LPPVTEEVGS NPLKEGDVKD 240 KKAKSIPSPT PISGTAEGEQ PVSDFWNSPM SQKRVKRRRE SSNGCTDSNL GYKLLKILER 300 NTSMLHAQLD AQINNHQLDR EQRKEHTDSL IAALNKVTDA LARIADKM*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MTSGSAEMNG NTTPLANRHQ KPTEDGKSKT PRHSRWTRQE TLVLIQGKKV AEERAHRGRR  60
STSIFGSDKP EPKWDSVSSY CRQHGADRGP VQCRKRWSNM ISDFKKIKTW ESQANGSSES  120
YWIISNDLRR EKRLPGSFDR EVYNVLDGKD VSAEACQLAL VTITTDDKFG YGMETVEEEE  180
EEEEEEXXXX XXXXXXEEEE EEEDNDDVSH TGEYTMEDDV LPPVTEEVGS NPLKEGDVKD  240
KKAKSIPSPT PISGTAEGEQ PVSDFWNSPM SQKRVKRRRE SSNGCTDSNL GYKLLKILER  300
NTSMLHAQLD AQINNHQLDR EQRKEHTDSL IAALNKVTDA LARIADKM*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016567545.1	0.0	PREDICTED: trihelix transcription factor ASR3-like
Swissprot	Q8VZ20	6e-54	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2G3A2W7	0.0	A0A2G3A2W7_CAPAN; Uncharacterized protein
STRING	PGSC0003DMT400036757	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1786	24	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-56	Trihelix family protein

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]